Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs76430365 chr12:56699993 A/C 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs76436464 chr8:126247054 A/G 2.95E-5 178 25.35 28.3 4.17 KM Plot
PCPG rs76456605 chr18:74533711 T/C 7.67E-9 174 25.67 24.5 10.17 KM Plot
PCPG rs76466034 chr12:56719450 G/A 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs7648817 chr3:136649463 C/T 0.000296 176 20.2 27.27 23.03 KM Plot
PCPG rs7649366 chr3:80585455 G/A 6.33E-5 177 19.53 24.53 27.4 KM Plot
PCPG rs7650693 chr3:182608551 A/G 1.06E-5 174 25.87 27.2 11.78 KM Plot
PCPG rs7651149 chr3:129055886 G/A 0.000333 176 25.67 25.27 10.3 KM Plot
PCPG rs7651644 chr3:136649846 G/A 0.000296 176 20.2 27.27 23.03 KM Plot
PCPG rs76529968 chr20:6029552 T/C 0 178 25.53 23.08 2.93 KM Plot
PCPG rs76537770 chr18:44145290 C/T 1.22E-7 176 25.08 26.57 19.87 KM Plot
PCPG rs76565961 chr17:1410837 T/G 1.46E-5 174 25.05 25 25.17 KM Plot
PCPG rs76566037 chr17:1429560 T/C 1.14E-5 178 24.7 26.73 25.17 KM Plot
PCPG rs765719 chr14:74541484 A/C 0.000202 177 25.28 27.27 10.43 KM Plot
PCPG rs76618240 chr1:227957949 G/A 4.0E-11 176 25.87 21.38 10.3 KM Plot